A BioIO conversion tool for going between image formats

A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processing and multi-dimensional concatenation.

Browse, share, and publish OME-Zarr data

Reusable in-situ sequencing analysis workflow orchestrated by Nextflow

WebGL point cloud viewer for large datasets

Apache OpenDAL: One Layer, All Storage.

core rendering canvas and data loading services for Vol-E volume viewer

AWS JavaScript S3 Explorer is a JavaScript application that uses AWS's JavaScript SDK and S3 APIs to make the contents of an S3 bucket easy to browse via a web browser.

nextflow DSL2 pipeline (leveraging /[raw2ometiff](https://github.com/glencoesoftware/raw2ometiff)) to convert almost any images t…

Tool for precise, interactive, fast and scalable FISH spot detection

Spark version of RS-FISH that can analyze large N5 volumes in a distributed fashion locally, on the cluster or in the cloud

A framework for easy application of established machine learning techniques on large, multi-dimensional images.

Basic example of using OME-Zarr in a Nextflow pipeline

CPU and GPU deterministic and therefore fully reproducible machine learning pipelines using MLflow.

Nextflow runs monitoring and organisation UI

Unix table column and row manipulation using column names

EASI-FISH analysis pipeline for spatial transcriptomics

A multi-camera capture, streaming and recording GUI application

The swiss army knife of lossless video/audio editing

ColorMIP_Mask_Search plugin for Fiji

Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

Nextflow Tower system

A DSL for data-driven computational pipelines

A minimalistic UI to conveniently upload and download files from AWS S3

Janelia Workstation

JACS Configuration Management

Python module for using KTX format OpenGL texture image files

Java API to IBM Platform LSF

Lightweight node.js based web service that provides user authentication against LDAP server (Active Directory / Windows network) credentials and returns a JSON Web Token.