FISK: Fast Iteration of Spaced K-mers

A modern multiple sequence alignment browser - built for the terminal.

ybyra is a Snakemake workflow which calls Y-chromosome haplogroups by using a tree-based scoring of derived and ancestral SNP calls

Custom CSS theme for doxygen html-documentation with lots of customization parameters.

Greg's Template Library of useful classes.

A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.

A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.

Convert bioinformatics file formats to Zarr

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

A toolkit for analyzing and visualizing phylogenetic placement data

C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

Python 3 library with good support for both reading and writing VCF

Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees

A C++ header-only ZLib wrapper

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes

Check and score C/C++ software quality

CLI11 is a command line parser for C++11 and beyond that provides a rich feature set with a simple and intuitive interface.

A fast, memory efficient hash map for C++

The C++ Standard Library for Parallelism and Concurrency

This module contains decorators for parallel vectorization of functions

A client/server indexer for c/c++/objc[++] with integration for Emacs based on clang.

A simple C++11 command line argument parser

Binder, tool for automatic generation of Python bindings

JSON for Modern C++

mPTP - a tool for single-locus species delimitation