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Commits on Jan 23, 2019

• Fix to use GRCh37 in Ensembl biomart instead of the default GRCh38

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• Update detailed_gene and summary_gene tables filename

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• Fix, update and automate generation of detailed_gene and summary_gene tables.

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Commits on Jan 22, 2019

• set version for imminent release

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• remove stale tests

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Commits on Jan 17, 2019

• update to cadd v1.4

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• update to dbsnp 151. see #912

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Commits on Jan 16, 2019

• add gnomad non_cancer_AF

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• set compound-het priority to be float

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• update and make dbsnp smaller

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Commits on Jan 15, 2019

• add allele frequency for gnomad controls and non_neuro

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• update gnomad to r2.1

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Commits on Jan 14, 2019

• update clinvar. see #912

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• update dgidb_url

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Commits on Dec 13, 2018

• update clinvar script

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Commits on Aug 13, 2018

• update gnomad to 2.0.2 and decompose with new vt

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Commits on Feb 15, 2018

• normalize vep names. closes #887

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Commits on Nov 9, 2017

• test for write access before amend and annotation_provenance

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• browser: emtpy gt_filter is set to None

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Commits on Sep 28, 2017

• fix unicode errors on load and on gemini annotate

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Commits on Sep 19, 2017

• fix loading for ipython multicore if vcf is not in pwd

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Commits on Jul 22, 2017

• allow showing per-sample gt stuff in genewise

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Commits on Jul 21, 2017

• fix genewise again

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• re-fix genewise

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• fix bug reported by @jxchong

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Commits on Jul 19, 2017

• Merge branch 'master' of https://github.com/arq5x/gemini into gnomad-up

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• update history and install-data for newest gnomad

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Commits on Jul 18, 2017

• Merge pull request #856 from mbootwalla/gnomad_fix

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• genewise: only show variants that meet the require number of optional filters

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Commits on Jul 17, 2017

• Added a fix to make-gnomad.sh perl regex to avoid removing AF column from INFO field of multi-allelic sites in gnomad exomes vcf

  

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Commits on Jun 9, 2017

• Install: ensure conda-forge in conda channels

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Commits on May 29, 2017

• Install: avoid certificate issues on AWS downloads

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Commits on May 20, 2017

• Avoid checking Miniconda certificate. Fixes #845

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Commits on May 2, 2017

• allow specifying gene selection in comp-het tool

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• allow specify gt_type in gt-filter.

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