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The best workflows and configurations I've developed, having heavily used Claude Code since the day of it's release. Workflows are based off applied learnings from our AI-native startup.

3,885 565 Updated Sep 14, 2025

Protect your secrets using Gitleaks-Action

JavaScript 636 192 Updated Jul 21, 2026

🦉 Data Versioning and ML Experiments

Python 15,830 1,324 Updated Aug 19, 2026

Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.

Python 1,735 163 Updated Jul 15, 2026

An open-sourced research agent system deeply rooted in your Zotero library.

TypeScript 2,692 153 Updated Aug 20, 2026

Zotero MCP: Connects your Zotero research library with Claude and other AI assistants via the Model Context Protocol to discuss papers, get summaries, analyze citations, and more.

Python 4,722 378 Updated Aug 13, 2026

Aria is Your AI Research Assistant Powered by GPT Large Language Models

JavaScript 1,723 116 Updated Apr 1, 2025

Zotero AI plugin Research assistant for Zotero 9. Chat with your library, run federated scholarly search, RAG, OCR, systematic reviews, and manage cloud storage. Includes standalone MCP, Agentic ca…

TypeScript 76 4 Updated Jul 9, 2026

A complete AI agency at your fingertips - From frontend wizards to Reddit community ninjas, from whimsy injectors to reality checkers. Each agent is a specialized expert with personality, processes…

Shell 146,400 23,657 Updated Aug 6, 2026

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

Python 1,110 254 Updated Aug 20, 2026

AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU

Python 164 22 Updated May 4, 2026

EnzyMM - Enzyme Motif Miner - Geometric matching of catalytic motifs in protein structures.

Python 43 2 Updated Aug 11, 2026

[Nature Communications] Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration

Python 136 38 Updated Jun 30, 2026

Flexible and scalable template based on PyTorch Lightning + Hydra. Efficient workflow and reproducibility for rapid ML experiments.

Python 251 12 Updated Nov 30, 2023

An extremely fast Python package and project manager, written in Rust.

Rust 88,905 3,501 Updated Aug 20, 2026

PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.

Python 262 40 Updated Nov 5, 2025

Qwen3-VL is the multimodal large language model series developed by Qwen team, Alibaba Cloud.

Jupyter Notebook 19,806 1,834 Updated Jan 30, 2026

A curated list of awesome leaderboard-oriented resources for AI domain

379 58 Updated Aug 3, 2026

Neanes is a free and open source scorewriter for notating Byzantine chant in Byzantine notation.

TypeScript 82 26 Updated Aug 19, 2026

Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

C++ 458 50 Updated Aug 6, 2026

Learn then Test: Calibrating Predictive Algorithms to Achieve Risk Control

Jupyter Notebook 74 10 Updated Nov 17, 2024

Lightweight, useful implementation of conformal prediction on real data.

Jupyter Notebook 1,079 122 Updated Nov 14, 2025

Automated lung segmentation in CT

Python 794 165 Updated Jul 21, 2026

Official repository for Citation Style Language (CSL) citation styles.

Ruby 3,875 4,140 Updated Aug 18, 2026

MagenticLite is an experimental agent that works across the browser and local file system

Python 10,067 1,014 Updated Aug 19, 2026

CORAL and CORN implementations for ordinal regression with deep neural networks.

Python 277 29 Updated Sep 22, 2025

Efficient vision foundation models for high-resolution generation and perception.

Python 3,351 256 Updated Sep 5, 2025

Deep survival analysis made easy

Python 215 15 Updated Jul 1, 2026
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