Read, write, and manipulate SnapGene files (.dna, .rna, .prot)

Estimated Marginal Means and Marginal Effects from Regression Models for ggplot2

Enhanced stain normalization for histopathology images with batch processing support. Optimized for CPU, GPU (CUDA), and MPS (Apple Silicon) devices.

cell detection in calcium imaging recordings

Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (built on La-Proteina) with inference-time optimization.

Run Shiny on Python and R (compiled to wasm) in the browser

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.

Data validation toolkit for assessing and monitoring data quality.

Genomic coordinates of problematic genomic regions as GRanges

This R script is designed to format FAIRe data specifically for MDT

A program to analyze eDNA metabarcoding sequence data from multiple trophic levels to identify drivers and patterns of biodiversity. This program treats read counts as draws from a beta distributio…

Claude Code is an agentic coding tool that lives in your terminal, understands your codebase, and helps you code faster by executing routine tasks, explaining complex code, and handling git workflo…

A framework for building, orchestrating and deploying AI agents and multi-agent workflows with support for Python and .NET.

Creating waffle charts in a ggplot friendly way

A pre-commit hook for Ruff.

NVIDIA cuML: GPU-Accelerated Machine Learning

skops is a Python library helping you share your scikit-learn based models and put them in production

sunburst plots for taxonomy - working to update Krona

Non-linear phylogenetic regression using regularized kernels

Implementation of the Aurora model for Earth system forecasting

🔥🔥🔥 Open-source Jira, Linear, Monday, and ClickUp alternative. Plane is a modern project management platform to manage tasks, sprints, docs, and triage.

one page guides that i let my subscribed/customised agents consume to perform actions

GNverifier verifies scientific names against more than 100 biodiversity databases

Model Context Protocol For R

Access large language models from the command-line

🚀 The fast, Pythonic way to build MCP servers and clients.