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@tetramerFreqs @SonnenburgLab @PangolinBio @FischbachLab @nuancedhealth

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An interface library for RL post training with environments.

Python 2,341 401 Updated Jun 22, 2026

A vector index built on TurboQuant, written in Rust with Python bindings

Python 12,100 1,069 Updated Jun 10, 2026

A collection of DESIGN.md files analysis by popular brand design systems. Drop one into your project and let coding agents generate a matching UI.

92,272 10,972 Updated Jun 16, 2026

AI agents running research on single-GPU nanochat training automatically

Python 88,153 12,760 Updated Mar 26, 2026

Open GenAI Stack

Python 8,414 1,315 Updated Jun 23, 2026

NVIDIA Digital Biology examples for optimized inference and training at scale

226 59 Updated Apr 19, 2026

Agent Laboratory is an end-to-end autonomous research workflow meant to assist you as the human researcher toward implementing your research ideas

Python 5,703 795 Updated Aug 20, 2025

Deep Learning with TensorFlow, Keras, and PyTorch

Jupyter Notebook 659 378 Updated Apr 21, 2024

Genome modeling and design across all domains of life

Jupyter Notebook 3,950 505 Updated Jun 19, 2026

An awesome repository of community-curated applications of ChatGPT and other LLMs in computational biology

274 27 Updated Apr 16, 2024

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Python 655 81 Updated May 15, 2026

Discovery of conserved gene clusters in multiple genomes

C 133 7 Updated Jan 16, 2026

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

Python 179 35 Updated Apr 22, 2026

cuGraph - RAPIDS Graph Analytics Library

Cuda 2,199 361 Updated Jun 22, 2026

πŸ“¦ 🐳 Dockerfiles and documentation on tools for public health bioinformatics

Dockerfile 224 137 Updated Jun 18, 2026

MCL, the Markov Cluster algorithm, also known as Markov Clustering, is a method and program for clustering weighted or simple networks, a.k.a. graphs.

C 112 12 Updated Sep 19, 2025

πŸ‡ GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations

Jupyter Notebook 635 39 Updated Feb 24, 2024

πŸ‘οΈ Python library to plot DNA sequence features (e.g. from Genbank files)

Python 691 105 Updated Jul 2, 2025

A GPT-4 AI Tutor Prompt for customizable personalized learning experiences.

29,602 3,303 Updated Sep 30, 2025

AI and Machine Learning with Kubeflow, Amazon EKS, and SageMaker

Jupyter Notebook 3,427 1,086 Updated Jul 31, 2024

A unifying framework for biomedical research knowledge graphs

Python 313 54 Updated Jun 22, 2026

Examples and guides for using the OpenAI API

Jupyter Notebook 74,316 12,577 Updated Jun 22, 2026

Machine Learning University: Accelerated Natural Language Processing Class

Jupyter Notebook 2,433 633 Updated Oct 13, 2024

The Markdown Resume

TeX 1,761 761 Updated Feb 28, 2024

Collection of bioinformatics training materials

Python 1,133 198 Updated Jun 21, 2026

Curated Metagenomic Data of the Human Microbiome

R 156 31 Updated Jun 19, 2026

pandas on AWS - Easy integration with Athena, Glue, Redshift, Timestream, Neptune, OpenSearch, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretManager, PostgreSQL, MySQL, SQLServer and S3 (…

Python 4,109 733 Updated Jun 22, 2026

Graph Neural Network Library for PyTorch

Python 23,834 4,003 Updated Jun 19, 2026

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

Python 137 39 Updated Apr 22, 2026

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

Python 412 93 Updated Jun 8, 2026
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