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  • University of Massachusetts Medical School
  • Worcester, MA

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@dekkerlab @GaleProt @open2c

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These are policy-driven snapshot management and replication tools which use OpenZFS for underlying next-gen storage. (Btrfs support plans are shelved unless and until btrfs becomes reliable.)

Perl 3,793 343 Updated Jun 5, 2026

A simplified version of Dorado built on top of S/BLOW5 format.

C++ 40 16 Updated Jun 22, 2026

A repository for collecting GPU basecalling stats

92 4 Updated May 11, 2026

Stream Postgres to Apache Iceberg on S3 via logical replication, queryable over the Postgres wire protocol.

Go 253 8 Updated May 31, 2026

Lightweight and extensible compatibility layer between dataframe libraries!

Python 1,658 201 Updated Jun 21, 2026

StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning

Python 12 3 Updated May 25, 2026

🖥 Control your display's brightness & volume on your Mac as if it was a native Apple Display. Use Apple Keyboard keys or custom shortcuts. Shows the native macOS OSDs.

Swift 33,497 972 Updated Apr 19, 2026

An efficient unique-line counter (25x over `sort | uniq -c`)

Rust 120 2 Updated Dec 8, 2025
Python 195 11 Updated Feb 10, 2026

bioinformatics toolkit in rust

Rust 107 4 Updated May 14, 2026

Minimal CSS Framework for semantic HTML

CSS 16,672 504 Updated May 9, 2026

The official repository for tariff

Python 3,117 41 Updated Apr 16, 2025

Bam Read Index - Extract alignments from a bam file by readname

C 29 8 Updated Apr 22, 2024

A tool to index and extract data from gzipped FASTQ files

C++ 2 1 Updated Dec 9, 2021

Lighter web automation with Python

Python 8,309 513 Updated Jun 3, 2026

Codon's bioinformatics module

C++ 58 3 Updated Aug 6, 2025

A high-performance, zero-overhead, extensible Python compiler with built-in NumPy support

Python 16,798 604 Updated Jun 19, 2026

A markup-based typesetting system that is powerful and easy to learn.

Rust 54,473 1,619 Updated Jun 19, 2026

Powerful and versatile visualization for Python.

Python 842 71 Updated Jun 18, 2026

An extensible, state-of-the-art framework for columnar compression, and the fastest FOSS columnar file format. Formerly at @spiraldb, now an Incubation Stage project at LFAI&Data, part of the Linux…

Rust 3,031 173 Updated Jun 22, 2026

The Open-Source Email Platform

TypeScript 5,194 365 Updated Jun 21, 2026

Simple way to manage your remote machines and SSH keys

Go 752 10 Updated Sep 30, 2024

Pulumi - Infrastructure as Code in any programming language 🚀

Go 25,337 1,384 Updated Jun 21, 2026

A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

Python 21,534 1,145 Updated Jun 21, 2026

A collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.

229,604 13,746 Updated Nov 19, 2024

Python tools to create and manipulate SVG files

Python 336 88 Updated Jun 22, 2026

A fast, accurate and multilingual fuzzy search library for the frontend.

TypeScript 1,120 20 Updated Oct 31, 2025

A high-performance BigWig and BigBed library in Rust

Rust 117 10 Updated Jun 7, 2026
Dockerfile 3 Updated Mar 26, 2025

11-color Palette Generator and API for Tailwind CSS

TypeScript 1,266 81 Updated Jun 12, 2026
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