API-first variant triage pipeline combining genomic filtering, annotation, and LLM-driven interpretation for clinical genomics workflows

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Simple and Customizable Tables in `R`

Template for UKCEH pdf reports composed with Quarto and Typst

A beautiful, simple, clean, and responsive Jekyll theme for academics

Ontology-first LinkML schema for Reactome with generated Python models, ontology artifacts, mappings, and docs from one curated source

🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species

Personal website built with Quarto

Merge per-caller VCF outputs from nf-core/sarek (FreeBayes, HaplotypeCaller, DeepVariant) into a single patient-level VCF

Machine learning preprocessing, exploratory analyses and modeling for somatic cancer variants

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

CPIC Data definitions and code to use that data

User friendly and accurate binder design pipeline

MTBBench is a benchmark designed to evaluate the reasoning capabilities of multimodal large language models (LLMs) in complex clinical decision-making scenarios. It focuses on two core challenges i…

A better, faster way to count guides in CRISPR screens.

An R-package with a modular library for the design and analysis of drug combination screens

Pangolin is a deep-learning method for predicting splice site strengths.

Modular & interactive analysis components for bioinformatics

Build SVG Custom User Interface in R, rmd, qmd and Shiny

Modeling of time series data for CRISPR KO experiments

TrialMatchAI aims to leverage large language models (LLMs) to streamline patient matching with clinical trials based on unique patient characteristics and eligibility criteria

Tools for theming Shiny and R Markdown via Bootstrap 3, 4, or 5.

Synthetic mutational catalogs and evaluation of tools for fitting mutational signatures

Improving Public Access to Aggregate Content of ClinicalTrials.gov

An R interface to the GTEx Portal API

A small command line tool to simplify releasing software by updating all version strings in your source code by the correct increment and optionally commit and tag the changes.

Backend library for conversational AI in biomedicine

Utilizing single-cell omics from patients tumor to predict response and resistance.

Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"