Quarto extension for persistent interactive terminal sessions

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

Find PROTECT bugs in the C code of R packages — a fast, source-level alternative to rchk

Coding related skill definitions for numerical computing, JAX, Equinox, general Rust and polars

A collection of papers on awesome genome acceleration, e.g., architectures, systems, and algorithms.

Fast alignment tool based on bwa-mem

A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst

Gzip Decompression and Random Access for Modern Multi-Core Machines

DRAGEN open-source mapper

CUDA Tile programming in Julia

Quick, simple, console-width-aware object inspection for R.

Turn complex codebases into clear, navigable architecture diagrams with Claude Code.

Imputation reference panels for HLA-E, -F, -G and MICAB

A self-improving RLM agent for coding workflows and long-running autonomous tasks.

A 2.78-trillion-parameter Kimi K3 running inference on a single CPU in 8.24 GB of RAM. Portable C99: no BLAS, no framework, no GPU.

A DBI-compliant interface to PostgreSQL

Distributed execution for duckdb queries.

Tiny Pointer Hash Table

Easy bindings between Lean and Python.

Foundations for the Rust omics ecosystem.

Reference implementation and examples of the CuTe Layout representation and algebra.

Generate tests from examples using 'roxygen' and 'testthat'

pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2

1-code framework: docs, C-library, and tools

GC-biased gene conversion, the recombination requirement, and Lewontin's paradox of variation — manuscript + Lean 4 formalization