AnnotatorJ: ImageJ plugin for object annotation in 2D

Evaluation of biological effects from microscopy images

code for DeepCycle paper

PAthological QUpath Obsession - QuPath and Python conversations

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

Demo material for the EG16 tutorial on "Deep learning for 3D shape analysis"

Learning Descriptor Networks for 3D Shape Synthesis and Analysis

A python module for scientific analysis of 3D data based on VTK and Numpy

A framework for data augmentation for 2D and 3D image classification and segmentation

A tool for cell instance aware segmentation in densely packed 3D volumetric images

3D U-Net model for volumetric semantic segmentation written in pytorch

CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

Robust Classification of Cell Cycle Phase and Biological Feature Extraction by Image-Based Deep Learning

A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

End-to-End Object Detection with Transformers

Various python snippets

Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.

This is the implementation of Noise2Void training.

StarDist - Object Detection with Star-convex Shapes

Useful files and scripts for transmission EM