Filament Extraction and Characterization Pipeline

Matlab codes for the modeling

2D/3D biopolymer network extraction and quantification.

a Living ENsemble Simulator -- a lens to help you watch biophysics

Brownian dynamics code simulating, at the discrete filament level, an actin network undergoing retrograde flow and interacting with a nascent focal adhesion.

Extraction and tracking of dynamic biopolymer networks.

This project is an example of implementing continuous piecewise Lennard-Jones-like potentials in Lammps, such as the model of Kim & Hummer. Instead of writing a custom pair_style, only standard pai…

Active countour based segmentation. FIJI plugin.

Automatically exported from code.google.com/p/speckletrackerj