Powerful system-level package manager for Linux, macOS and Windows written in Rust – building on top of the Conda ecosystem.

Configure Syncthing from the terminal

Open Source Continuous File Synchronization

Genomics pipelines

A simple, flexible script for versioned backups using btrfs and rsync

Knead your sequencing reads before baking: clips, demultiplexes, filters and trims reads

JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage

Makes aiohttp server autoreload on source code change

Failing Disk Reporter (FDR): Get a report when a drive (HDD or SDD) is failing via Matrix or Slack. MIRROR

Versatile databases for genomic sequencing and lab management

Counts and profiles sequencing reads within genes, chromosomes or constructs.

Small utility functions for Python: logging, parallel tasks, zstd

A blazing fast npm compatible package installer in Rust. Reads package.json; installs packages.

A fast PostgreSQL Database Client Library for Python/asyncio.

Let's Encrypt/ACME client and library written in Go

Optional tools to help manage data in a mergerfs pool

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

matplotlib: plotting with Python