NekCEM

Suppose that NekCEM has been installed into the directory NEK and you have the following example.

example
|- example.usr
|- example.rea
|- example.box
\- SIZE

To build this example:

• copy the script $NEK/bin/makenek to example
• set the script variable NEK to the location of your NekCEM installation
• set APP to the application you are targeting; should be one of maxwell, drift, or schrod
• set FC and CC to your desired Fortran and C compilers
• run ./makenek example

This should create an executable nekcem in example. By default makenek will try to determine a sensible set of FFLAGS and CFLAGS, but you can override it by setting FFLAGS and CFLAGS. Similarly it will try to determine reasonable values for LD and LDFLAGS. You can also add additional flags to the set of flags it chooses by setting EXTRAFFLAGS, EXTRACFLAGS, and EXTRALDFLAGS.

To run the example run $NEK/bin/nek example $NP, where NP is the number of processors you want to use for the run.

The script makenek is a front-end for the script configurenek, which can also be called directly. To build with configurenek:

• run $NEK/bin/configurenek app example [options] in the example directory. As with makenek, the argument app is the application being targeted. There are many possible options; run with the -h flag for a full list. The most basic options are --FC and --CC, which you can use to set the Fortran and C compilers being used. Alternatively, if you are on a known machine such as cetus, then you can just pass --arch cetus, which will correctly set the compilers and flags for you. See $NEK/bin/arch.json for a list of known machines.
• Running configurenek creates a makefile in example which you can use to compile the example.

To run the tests, run $NEK/bin/runtests [options]. For a complete list of the options use the -h flag.