Starred repositories
Super Productivity is an advanced todo list app with integrated Timeboxing and time tracking capabilities. It also comes with integrations for Jira, GitLab, GitHub and Open Project.
Algebraic Primitives for Sparse Data Structures in Python
Local-first, Zotero-style desktop app to track journal/conference deadlines, peer reviews, and your own paper progress (Tauri + React + SQLite).
Lightweight loop engineering state kernel for long-running AI agent teams. Agent-loop agnostic across Codex, Claude Code, and other coding agents, with durable goals, quota-aware auto-wake, executa…
Curated cancer reference data: ontology, TMB, incidence/mortality, and expression. Bottom-of-stack for the openvax/PIRL libraries.
Visual LaTeX formula editor for macOS and Windows
Tinycast — a tiny, fully native macOS launcher, hotkeys, and clipboard history
Quickly build Explainable AI dashboards that show the inner workings of so-called "blackbox" machine learning models.
An open-source graph engineering runtime that keeps orchestration in TypeScript and delegates semantic work to replaceable Agent runtimes.
Python 3.14, compiled to metal — JIT & AoT native compiler and runtime in Rust. Cranelift backend, ruff parser, Green Tea GC, byte-exact differential testing against CPython.
🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science journals
Fast, open-source, GPU-rendered file manager for macOS. A Finder alternative built in Rust with GPUI.
Toolkit designed to parse complex source code and transform it into a rich, structured, and queryable knowledge graph
PyTorch operations for use in creating machine learning interatomic potentials
Impress your boss with interactive Decision Tree visualization
10k protein structures, no time limit, best val loss wins
Book about interpretable machine learning
Miniprotein and antibody design pipeline for ESMFold2
Molecular Annotation and Recognition for Curating Unravelled Structures
Transformer Explained Visually: Learn How LLM Transformer Models Work with Interactive Visualization
Ultra-lightweight, open-source, self-hosted personal AI agent framework in Python with WebUI, tools, memory, MCP, multi-agent workflows, automation, and chat apps
A complete roadmap to master LLMs from absolute beginners to advanced
A high-level programming language for generative biology
A universal infrastructure layer for generative biology