A CMake SuperBuild harness providing a suite of command-line tools for brain MRI processing — registration, segmentation, atlas generation, DWI processing, and defacing. Developed at the University of Iowa and also distributed as part of 3D Slicer.

Documentation: https://brainsia.github.io/BRAINSTools/

• Tool catalog
• Wiki

git clone https://github.com/BRAINSia/BRAINSTools.git
cmake -S BRAINSTools -B BRAINSTools-build -DCMAKE_BUILD_TYPE=Release
cmake --build BRAINSTools-build

The SuperBuild fetches and builds dependencies (ITK, VTK, ANTs, …) automatically, then builds the BRAINSTools. On macOS, first install the command line tools with xcode-select --install.

Run ./Utilities/SetupForDevelopment.sh, then pre-commit install. See CONTRIBUTING.md.

Apache 2.0. See LICENSE.