Pipeline for putting surface meshes into correspondence

Simple Principal Curves in Python

Open source Python library for building bioimage analysis pipelines

the Vascular Modeling Toolkit

Time series Timeseries Deep Learning Machine Learning Python Pytorch fastai | State-of-the-art Deep Learning library for Time Series and Sequences in Pytorch / fastai

A CUDA implementation of the SLIC Superpixel algorithm

Extraction of 3D skeletons from meshes.

Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the experimenter). Intensify3D yields facilitated visualization…

Live-cell imaging cell-state trajectory embedding

A game theoretic approach to explain the output of any machine learning model.

Automatic extraction of relevant features from time series:

Subpopulation detection in high-dimensional single-cell data

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A napari plugin for clustering objects according to their properties.