Linux	Mac OSX

Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

CMake 2.6+; see http://www.cmake.org/cmake/resources/software.html

c++ compiler; compilation was tested with gcc and g++ version>=4.5 (Linux) and clang version>=4.1 (Mac OSX).

# get a local copy of minia source code
git clone --recursive https://github.com/GATB/minia.git

# compile the code on your computer
cd minia
sh INSTALL

Type minia without any arguments for usage instructions.

Short manual: http://minia.genouest.org/files/minia.pdf

#Contact

To contact a developer, request help, etc: https://gatb.inria.fr/contact/