Bento, the office suite that fits in a file

Positron, a next-generation data science IDE

Open-source AI penetration testing tool to find and fix your app’s vulnerabilities.

Geometric morphometrics in non-Euclidean shape spaces.

Compress tool outputs, logs, files, and RAG chunks before they reach the LLM. 20% fewer tokens for coding agents, 60-95% fewer tokens for JSON, same answers. Library, proxy, MCP server.

Zotero MCP: Connects your Zotero research library with Claude and other AI assistants via the Model Context Protocol to discuss papers, get summaries, analyze citations, and more.

Bringing ✨interactivity✨ to plotnine

Neovim AI agent done right

data load tool (dlt) is an open source Python library that makes data loading easy 🛠️

Build realtime web, mobile and desktop apps in Python only. No frontend experience required.

FastStream is an asynchronous Python framework for building event-driven applications. It brings together message broker integration, dependency injection, validation, testing utilities, and AsyncA…

FastAPI pagination 📖

Benchmark for LLM-based Agents in Computational Biology

Python for Windows (pywin32) Extensions

Open source repository of plugins primarily intended for knowledge workers to use in Claude Cowork

Pre-indexed code knowledge graph, auto syncs on code changes, for Claude Code, Codex, Gemini, Cursor, OpenCode, AntiGravity, Kiro, and Hermes Agent — fewer tokens, fewer tool calls, 100% local

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

Simple package for fast molecular similarity searches

Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Sixel/Kitty graphics

Molecular Processing Made Easy.

An extensible, state-of-the-art framework for columnar compression, and the fastest FOSS columnar file format. Formerly at @spiraldb, now an Incubation Stage project at LFAI&Data, part of the Linux…

Parsl - a Python parallel scripting library

A Python library for converting instrument data into Allotrope Simple Model (ASM)

LLM inference in C/C++

Scalable and efficient data transformation framework - backwards compatible with dbt.

Write reproducible code for getting and processing ChEMBL

Multiple Protein Structure Alignment at Scale with FoldMason