Cython bindings and Python interface to HMMER3.

A community effort to create a shared resource for HMM-based RdRp discovery

Preprocessing script to reduce noise in orthology inference

Wavefront alignment algorithm (WFA) in Golang

Find endogenous viral elements in genomes

Insert SVG images into matplotlib elements. Can be used to also compose matplotlib plots by nesting them.

baltic - backronymed adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. Development is back on the evogytis/baltic branch (i.e. here).

Grep for FASTQ files

Align proteins to genomes with splicing and frameshift

Structural Variant Index

Aligns short reads using dynamic seed size with strobemers

Bifrost graph gene caller.

Accelerated BLAST compatible local sequence aligner.

Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data

WtP: Phage identification via nextflow and docker or singularity

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

a long read simulator that can imitate many types of read problems

A solid base for terminal bioinformatics

A small, simple editor for beginner Python programmers. Written in Python and Qt5.

DEPRECATED: This repository is now frozen - please see individual lesson repositories.

DEPRECATED: see https://github.com/swcarpentry/website for the current website.

Remix of Software Carpentry material using intermediate pandas lesson and concepts from the novice class

Data Carpentry workshop materials