Democratizing AI scientists with ToolUniverse

Streamlink is a CLI utility which pipes video streams from various services into a video player

Tools for working with OrthoXML files.

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

GENERator: A Long-Context Generative Genomic Foundation Model

An AI Hedge Fund Team

This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

NCBI Prokaryotic Genome Annotation Pipeline

Open source code for AlphaFold 2.

Infers a phylogenetic tree from protein structures

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

Data visualisation web components for the life sciences.

A package management tools for R

The uncompromising Python code formatter

Integrated Differential Expression and Pathway analysis

Git repository for FASTA36 sequence comparison software

gatk4 RNA variant calling pipeline

Scalable high-throughput short-read open reading frame prediction

Code and tutorials to visualise your data that is both beautiful *and* statistically valid

Phylogenetic orthology inference for comparative genomics

integrated RNA-seq Analysis Pipeline

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Automatically exported from code.google.com/p/cdhit

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

Bioinformatics one liners from Ming Tang