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1. ADEPT ADEPT Public

   ADEPT: Autoencoder with Differentially Expressed Genes and Imputation for a Robust Spatial Transcriptomics Clustering

   Python 6 1

2. LRSV_combo LRSV_combo Public

   Long Read Based SV Calling Tools Analysis

   Python 14

3. VolcanoSV VolcanoSV Public

   VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing

   C++ 9

4. BenchmarkST BenchmarkST Public

   Benchmarking clustering, alignment, and integration methods for spatial transcriptomics

   Jupyter Notebook 28 3

5. MaskGraphene MaskGraphene Public

   MaskGraphene: an advanced framework for interpretable joint representation for multi-slice, multi-condition spatial transcriptomics

   Jupyter Notebook 4

6. FocalSV FocalSV Public

   FocalSV: target region-based structural variant assembly and refinement using single-molecule long read sequencing data

   C++ 4