finally fast julia scripts

UCSC Web Tools

Docker images and notebook I use(d) on Terra (https://app.terra.bio/)

convert variation graph alignments to coverage maps over nodes

Giraffe pattern generator written in C++ for Motorola Science Cup contest

A header-only library for representation of sequence graphs

Open-source KVM software

Implementation of an efficient 3-edge-connected component algorithm

Algorithms to find balanced bundles and use them to further decompose a variation graph.

"Cyberpunk style" for matplotlib plots

command line interface to http://explainshell.com

CWL on Kubernetes

The "qsub" command is a command line utility that is used to submit batch jobs, and it is not limited to just Kubernetes.

Forked from git.0pointer.net/mutrace.git

A Strategy for Building and Using a Human Reference Pangenome

Docker in Docker

ChIP-seq peak caller for reads mapped to a graph-based reference genome

Importing vg json graphs to Python data structures.

Reverse-complement sequence search plugin for Vim

Convert a Google Drive Document to the Markdown format, suitable for publishing.

Dynamic succinct/compressed data structures

A package management tool

macOS window manager with Vim–like hotkeys

Deprecated project!!! See Hermes-Lite2 at main web site

sbt plugin to create a dependency graph for your project

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.