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Starred repositories

Showing results

Structural variation caller using third generation sequencing

Python 673 102 Updated Jul 20, 2026

napari: a fast, interactive, multi-dimensional image viewer for python

Python 2,714 524 Updated Jul 25, 2026

Neovim fugitive style git blame plugin

Lua 450 38 Updated Feb 12, 2026

A completion plugin for neovim coded in Lua.

Lua 9,475 436 Updated Jul 9, 2026

Portable package manager for Neovim that runs everywhere Neovim runs. Easily install and manage LSP servers, DAP servers, linters, and formatters.

Lua 10,407 336 Updated Jun 19, 2026

Find, Filter, Preview, Pick. All lua, all the time.

Lua 19,658 957 Updated Jun 27, 2026

💤 A modern plugin manager for Neovim

Lua 21,318 585 Updated Jun 29, 2026

An incremental parsing system for programming tools

Rust 26,426 2,783 Updated Jul 25, 2026

Nvim Treesitter configurations and abstraction layer

Tree-sitter Query 14,204 1,430 Updated Jul 25, 2026

Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

Scala 12,161 583 Updated Jan 19, 2025

Chai-1, SOTA model for biomolecular structure prediction

Python 1,970 277 Updated Jun 30, 2026

Mummer alignment tool

C++ 569 117 Updated Feb 4, 2025

RNA-seq aligner

C 2,226 547 Updated Mar 18, 2025

Reads simulator

C 285 92 Updated Sep 3, 2021

Align proteins to genomes with splicing and frameshift

C 410 25 Updated Jan 5, 2026

Automatically exported from code.google.com/p/figtree

Java 484 115 Updated May 17, 2026

An extremely fast Python package and project manager, written in Rust.

Rust 87,894 3,379 Updated Jul 26, 2026

HMMER: biological sequence analysis using profile HMMs

C 416 92 Updated Jul 14, 2026

Python 3 library with good support for both reading and writing VCF

Python 112 24 Updated Oct 2, 2025

A Variant Call Format reader for Python.

Python 419 194 Updated Sep 22, 2023

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

CSS 1,497 3,325 Updated Jun 27, 2024

A "batteries-included" distribution of ImageJ 🔋

Shell 999 257 Updated Jul 18, 2026

Genome-scale protein function classification

Java 387 75 Updated Jun 30, 2026

Tigerfish

HTML 13 2 Updated Jan 30, 2024

Genome-scale design tool for oligo hybridization probes

Python 72 26 Updated May 19, 2021

🌈Rainbow CSV - Vim plugin: Highlight columns in CSV and TSV files and run queries in SQL-like language

Python 715 30 Updated Oct 4, 2025

Accurate sample inference from amplicon data with single nucleotide resolution

R 554 172 Updated Feb 13, 2026

TEtrimmer: a novel tool to automate manual curation of transposable elements

Python 117 6 Updated Jul 24, 2026

Toolkit for evolutionary analyses of linkage groups

Python 34 4 Updated Jul 17, 2024

Find, circularise and annotate mitogenome from PacBio assemblies

Python 199 33 Updated May 11, 2025
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