FastAPI/NiceGUI/PostgreSQL application for processing sensor data and detecting outliers

Impactstory: the next generation

Playground for new GPML processing and curation

Homemade games played at home

The code for JEPA-DNA implements a genomic foundation model that combines generative pretraining with a joint-embedding predictive objective, enabling the model to learn both local nucleotide patte…

Code for the publication "A spatial transcriptomic atlas of acute neonatal lung injury across development and disease severity"

PgQueuer is a Python library leveraging PostgreSQL for efficient job queuing.

Docker image sandbox for claude code. Use this, remove all safeties, and let it rip!

A Field Guide to Scientific File Formats

React Application to robustly check if drugs are FDA approved.

GPU-accelerated local ancestry inference at biobank scale, no reference panel required.

Documentation, readme's, FAQs, SOPs, etc...

WebGL-based viewer for volumetric data

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

Visualization of biobank-scale genomic datasets.

BioData Catalyst Harmonized Model

Transform your favorite cities into beautiful, minimalist designs. MapToPoster lets you create and export visually striking map posters with code.

Run geogram on Linux, Android, Windows, OSX, iOS and Web

A sunburst interactive chart web component for visualizing hierarchical data

disk usage visualizer

This is the alpha version of the CellOracle package

Gene-Term Enrichment Analysis (GeneTEA)

Mondo Disease Ontology

Embeddable Postgres with real-time, reactive bindings.

Distributed single-cell data analysis.

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.