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FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

16 followers
Switzerland

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fmi-ij2-plugins fmi-ij2-plugins Public

A collection of ImageJ2 plugins for use with KNIME

Java 8 3
visiview-scripts visiview-scripts Public

A collection of macros for the VisiView acquisition software

Python 1 1
imagej-scripts imagej-scripts Public

Python 1

Repositories

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Showing 10 of 73 repositories

ngio-points-table Public
Prototype for a PointsTable implementation to serialize points data into OME-Zarr datasets

fmi-faim/ngio-points-table's past year of commit activity

Python 0 0 0 0 Updated Jul 24, 2026
napari-ome-zarr-navigator Public Forked from fractal-napari-plugins-collection/napari-ome-zarr-navigator

fmi-faim/napari-ome-zarr-navigator's past year of commit activity

Python 0 BSD-3-Clause 3 0 0 Updated Jul 24, 2026
staged-recipes Public Forked from conda-forge/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks

fmi-faim/staged-recipes's past year of commit activity

Python 0 BSD-3-Clause 6,215 0 0 Updated Jul 24, 2026
napari-save-transformed Public
Save image layers with their transformation applied

fmi-faim/napari-save-transformed's past year of commit activity

Python 3 BSD-3-Clause 0 1 0 Updated Jul 21, 2026
ome2xarray Public

fmi-faim/ome2xarray's past year of commit activity

Python 0 BSD-3-Clause 0 0 0 Updated Jul 21, 2026
faim-ipa Public
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

fmi-faim/faim-ipa's past year of commit activity

Python 20 BSD-3-Clause 9 20 7 Updated Jul 20, 2026
faim-fractal-converters Public

fmi-faim/faim-fractal-converters's past year of commit activity

Python 0 0 1 0 Updated Jul 20, 2026
fractal-hcs-qc Public
Fractal task to consolidate measurement tables in HCS plate zarrs

fmi-faim/fractal-hcs-qc's past year of commit activity

Python 0 BSD-3-Clause 0 7 0 Updated Jul 9, 2026
faim-wako-searchfirst Public
Python scripts for the SearchFirst option in Wako Software Suite

fmi-faim/faim-wako-searchfirst's past year of commit activity

Python 2 MIT 1 9 3 Updated Jul 7, 2026
ipa-project-template Public
Copier template for image processing & analysis projects.

fmi-faim/ipa-project-template's past year of commit activity

Jinja 7 MIT 3 6 (1 issue needs help) 1 Updated Jul 6, 2026

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