Automate downloading and processing PubMed in bulk

Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:

LLM-based ontological extraction tools, including SPIRES

Coordinating the mondo-ingest with external sources

AI co-scientist

Wikipedia as a social media feed

Streamlit application for multi-gene TRAPI query integration with NetworkX clustering and LLM-assisted exploration using Cytoscape.js visualization.

This repo is a list of papers that discuss errors in research due to software errors

A Snakemake executor plugin for submitting jobs to a SLURM cluster

Documentation for the JSON Lines text file format

A python GUI for custom training and prediction of AI models for automated taxonomic species descriptions

A registry of Knowledge Graphs, their data sources, and the ways they fit together.

Descent 3 by Outrage Entertainment

Prompts for field note transcription

A minimalistic opinionated Mastodon web client

🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python

Postgres Explain Visualizer 2

documentation for heal investigators on how to complete the heal study level core metadata CEDAR form created by the platform following initial study registration on the platform

HEAL Study-level core metadata

public documentation for the HEAL platform (healdata.org)

A service for finding CURIEs from lexical strings.

Web service API for the NCATS Data Translator CAM-KP

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.

Service that produces Translator compliant nodes given a curie