BayesCode, a Bayesian framework for phylogenetic comparative methods and phylogenetic codon models

fork of the GPU genome aligner

Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Arang Rhie

HiCAT new project

hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.

Build satellite library

De novo assembly from Oxford Nanopore reads.

A gap-closing software tool that uses long reads to enhance genome assembly.

Hybrid error correction approach for long reads using overlap graph

Constructing developmental tree from scRNA-seq data

Genome annotation

SRY: an effective method for sorting long-read of sex-limited (Y or W) chromosome. (Developed by WANG Xiaobo from CAAS)