BIFO
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RiboDetector
RiboDetector PublicAccurate and rapid RiboRNA sequences Detector based on deep learning
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traitar
traitar PublicForked from aweimann/traitar
From genomes to phenotypes: Traitar, the microbial trait analyzer
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epitope-prediction-paper
epitope-prediction-paper PublicData and results for the EpitopeVec paper
Repositories
- SeqDesk Public
Self-hosted web platform for sequencing facilities: orders, samples, MIxS metadata, sequencing files, bioinformatics pipelines, and ENA submission.
- covid-germany-mcmc Public
SARS-CoV-2 lineage importations and spread are reduced after nonpharmaceutical interventions in phylogeographic analyses
- seqdesk-pipeline-template Public template
Starter template for building a SeqDesk pipeline package (Nextflow) for the official pipeline store — see https://seqdesk.org/docs/pipelines/adding-pipelines
- Broker4Microbiota Public
Django App for collection and storage of sequencing orders for the sequencing facility
- Metax Public
Metax: Accurate Cross-Domain Taxon Profiling via a Probabilistic Model of Genome Coverage
- Metax-analyses-figures Public
Data tables and R scripts for reproducing the analyses and visualizations in the Metax paper
- slurm_gpu_idle_killer Public
- ChemLM Public
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