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@tetramerFreqs @SonnenburgLab @PangolinBio @FischbachLab @nuancedhealth

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An interface library for RL post training with environments.

Python 2,450 416 Updated Jul 26, 2026

A vector index built on TurboQuant, written in Rust with Python bindings

Python 14,413 1,278 Updated Jul 26, 2026

A collection of DESIGN.md files analysis by popular brand design systems. Drop one into your project and let coding agents generate a matching UI.

104,748 12,000 Updated Jun 16, 2026

AI agents running research on single-GPU nanochat training automatically

Python 92,119 13,159 Updated Mar 26, 2026

Open GenAI Stack

Python 8,422 1,335 Updated Jul 26, 2026

NVIDIA Digital Biology examples for optimized inference and training at scale

233 62 Updated Jul 16, 2026

Agent Laboratory is an end-to-end autonomous research workflow meant to assist you as the human researcher toward implementing your research ideas

Python 5,771 805 Updated Aug 20, 2025

Deep Learning with TensorFlow, Keras, and PyTorch

Jupyter Notebook 660 379 Updated Apr 21, 2024

Genome modeling and design across all domains of life

Jupyter Notebook 4,002 518 Updated Jun 19, 2026

An awesome repository of community-curated applications of ChatGPT and other LLMs in computational biology

275 27 Updated Apr 16, 2024

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Python 664 83 Updated Jul 10, 2026

Discovery of conserved gene clusters in multiple genomes

C 135 7 Updated Jan 16, 2026

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

Python 180 35 Updated Apr 22, 2026

cuGraph - RAPIDS Graph Analytics Library

Cuda 2,213 363 Updated Jul 24, 2026

πŸ“¦ 🐳 Dockerfiles and documentation on tools for public health bioinformatics

Dockerfile 225 141 Updated Jul 24, 2026

MCL, the Markov Cluster algorithm, also known as Markov Clustering, is a method and program for clustering weighted or simple networks, a.k.a. graphs.

C 114 12 Updated Sep 19, 2025

πŸ‡ GRAPE is a Rust/Python Graph Representation Learning library for Predictions and Evaluations

Jupyter Notebook 637 39 Updated Feb 24, 2024

πŸ‘οΈ Python library to plot DNA sequence features (e.g. from Genbank files)

Python 694 105 Updated Jul 2, 2025

A GPT-4 AI Tutor Prompt for customizable personalized learning experiences.

29,606 3,293 Updated Sep 30, 2025

AI and Machine Learning with Kubeflow, Amazon EKS, and SageMaker

Jupyter Notebook 3,429 1,085 Updated Jul 31, 2024

A unifying framework for biomedical research knowledge graphs

Python 319 55 Updated Jul 21, 2026

Examples and guides for using the OpenAI API

Jupyter Notebook 74,922 12,672 Updated Jul 27, 2026

Machine Learning University: Accelerated Natural Language Processing Class

Jupyter Notebook 2,431 632 Updated Oct 13, 2024

The Markdown Resume

TeX 1,769 762 Updated Feb 28, 2024

Collection of bioinformatics training materials

Python 1,140 199 Updated Jul 19, 2026

Curated Metagenomic Data of the Human Microbiome

R 158 31 Updated Jul 3, 2026

pandas on AWS - Easy integration with Athena, Glue, Redshift, Timestream, Neptune, OpenSearch, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretManager, PostgreSQL, MySQL, SQLServer and S3 (…

Python 4,117 737 Updated Jul 25, 2026

Graph Neural Network Library for PyTorch

Python 23,944 4,027 Updated Jul 22, 2026

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

Python 140 40 Updated Jul 8, 2026

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

Python 418 94 Updated Jul 24, 2026
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