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  • University of Massachusetts Medical School
  • Worcester, MA

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@dekkerlab @GaleProt @open2c

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These are policy-driven snapshot management and replication tools which use OpenZFS for underlying next-gen storage. (Btrfs support plans are shelved unless and until btrfs becomes reliable.)

Perl 3,824 345 Updated Jun 5, 2026

A simplified version of Dorado built on top of S/BLOW5 format.

C++ 41 16 Updated Jul 24, 2026

A repository for collecting GPU basecalling stats

91 4 Updated May 11, 2026

Stream Postgres to Apache Iceberg on S3 via logical replication, queryable over the Postgres wire protocol.

Go 260 8 Updated May 31, 2026

Lightweight and extensible compatibility layer between dataframe libraries!

Python 1,687 211 Updated Jul 25, 2026

StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning

Python 12 3 Updated Jul 20, 2026

🖥 Control your display's brightness & volume on your Mac as if it was a native Apple Display. Use Apple Keyboard keys or custom shortcuts. Shows the native macOS OSDs.

Swift 33,823 988 Updated Apr 19, 2026

An efficient unique-line counter (25x over `sort | uniq -c`)

Rust 119 2 Updated Dec 8, 2025
Python 196 10 Updated Feb 10, 2026

bioinformatics toolkit in rust

Rust 107 4 Updated Jul 16, 2026

Minimal CSS Framework for semantic HTML

CSS 16,741 503 Updated May 9, 2026

The official repository for tariff

Python 3,119 41 Updated Apr 16, 2025

Bam Read Index - Extract alignments from a bam file by readname

C 29 8 Updated Apr 22, 2024

A tool to index and extract data from gzipped FASTQ files

C++ 2 1 Updated Dec 9, 2021

Lighter web automation with Python

Python 8,320 513 Updated Jul 7, 2026

Codon's bioinformatics module

C++ 58 3 Updated Aug 6, 2025

A high-performance, zero-overhead, extensible Python compiler with built-in NumPy support

Python 16,814 603 Updated Jul 23, 2026

A markup-based typesetting system that is powerful and easy to learn.

Rust 55,095 1,655 Updated Jul 25, 2026

Powerful and versatile visualization for Python.

Python 858 71 Updated Jul 19, 2026

An extensible, state-of-the-art framework for columnar compression, and the fastest FOSS columnar file format. Formerly at @spiraldb, now an Incubation Stage project at LFAI&Data, part of the Linux…

Rust 3,096 193 Updated Jul 25, 2026

The Open-Source Email Platform

TypeScript 5,306 384 Updated Jul 25, 2026

Simple way to manage your remote machines and SSH keys

Go 751 10 Updated Sep 30, 2024

Pulumi - Infrastructure as Code in any programming language 🚀

Go 25,479 1,405 Updated Jul 25, 2026

A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

Python 22,050 1,194 Updated Jul 25, 2026

A collection of inspiring lists, manuals, cheatsheets, blogs, hacks, one-liners, cli/web tools and more.

235,153 13,983 Updated Nov 19, 2024

Python tools to create and manipulate SVG files

Python 336 87 Updated Jun 29, 2026

A fast, accurate and multilingual fuzzy search library for the frontend.

TypeScript 1,124 20 Updated Oct 31, 2025

A high-performance BigWig and BigBed library in Rust

Rust 118 10 Updated Jul 6, 2026
Dockerfile 3 Updated Mar 26, 2025

11-color Palette Generator and API for Tailwind CSS

TypeScript 1,275 82 Updated Jun 12, 2026
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