Stars
Genomic variant analysis platform
A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).
API-first variant triage pipeline combining genomic filtering, annotation, and LLM-driven interpretation for clinical genomics workflows
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Template for UKCEH pdf reports composed with Quarto and Typst
A beautiful, simple, clean, and responsive Jekyll theme for academics
Ontology-first LinkML schema for Reactome with generated Python models, ontology artifacts, mappings, and docs from one curated source
🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species
Personal website built with Quarto
Merge per-caller VCF outputs from nf-core/sarek (FreeBayes, HaplotypeCaller, DeepVariant) into a single patient-level VCF
Machine learning preprocessing, exploratory analyses and modeling for somatic cancer variants
🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Open. Free.
User friendly and accurate binder design pipeline
MTBBench is a benchmark designed to evaluate the reasoning capabilities of multimodal large language models (LLMs) in complex clinical decision-making scenarios. It focuses on two core challenges i…
A better, faster way to count guides in CRISPR screens.
An R-package with a modular library for the design and analysis of drug combination screens
Pangolin is a deep-learning method for predicting splice site strengths.
Modular & interactive analysis components for bioinformatics
Modeling of time series data for CRISPR KO experiments
TrialMatchAI leverages large language models to streamline clinical trial matching by evaluating patient-specific clinical characteristics against trial eligibility criteria and generating relevant…
Tools for theming Shiny and R Markdown via Bootstrap 3, 4, or 5.
Synthetic mutational catalogs and evaluation of tools for fitting mutational signatures
Improving Public Access to Aggregate Content of ClinicalTrials.gov
A small command line tool to simplify releasing software by updating all version strings in your source code by the correct increment and optionally commit and tag the changes.