UI for visualising fCAT results and comparing the completeness assessment between different data sets
From an R terminal, PhyloRBF can be installed using devtools:
if (!requireNamespace("devtools"))
install.packages("devtools")
devtools::install_github("trvinh/fCatVis", INSTALL_opts = c('--no-lock'), dependencies = TRUE)Then, to run it, enter:
library(fCatVis)
runFcatVis()There are 2 kinds of inputs can be uploaded into fCatVis:
- A single summary report from fCAT
- A folder containing several summary reports. Each file has to be named using this format
<species_name>.report_summary.txt(e.g.: HUMAN.report_summary.txt; CIONA.report_summary.txt; ...)
For any bug reports or questions, please open an issue on GitHub or be in touch via email tran@bio.uni-frankfurt.de