Stars
HTML PPT Studio — AgentSkill with 24 themes, 31 layouts, 20+ animations for building professional HTML presentations
Official release of OneGenome-Rice models.
The open-source managed agents platform. Turn coding agents into real teammates — assign tasks, track progress, compound skills.
A curated list of autonomous improvement loops, research agents, and autoresearch-style systems inspired by Karpathy's autoresearch.
Foundation Models for Genomics & Transcriptomics
LabClaw – Operating Layer for LabOS (Stanford-Princeton AI Co-Scientists)
The agent harness performance optimization system. Skills, instincts, memory, security, and research-first development for Claude Code, Codex, Opencode, Cursor and beyond.
Genome modeling and design across all domains of life
A Flexible Framework for Experiencing Heterogeneous LLM Inference/Fine-tune Optimizations
yangjl / methylome_evolution
Forked from jyanglab/msfs_teomSFS using a teosinte natural population
Rescale genetic polymorphism data to match a common sample size.
Cutadapt removes adapter sequences from sequencing reads
JupyterLab computational environment.
Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
Specifications of SAM/BAM and related high-throughput sequencing file formats
Using ANGSD and Python/R to calculate and plot pi-between in windows along the genome
R's data.table package extends data.frame:
Programs to analyse NGS data for population genetics purposes
An interactive data visualization tool which brings matplotlib graphics to the browser using D3.
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…
An ultrafast memory-efficient short read aligner