💫 Toolkit to help you get started with Spec-Driven Development

Free-Text Promptable Universal 3D Medical Image Segmentation

面向 Codex、Claude Code 等 Agent 的 SDD 规范驱动开发工作流 Skills

DDPET-3D implementation for 3D low-dose PET denoising

Harmonization of multi-site imaging data with ComBat

[Nature 2026] Merlin is a 3D VLM for computed tomography that leverages both structured electronic health records (EHR) and unstructured radiology reports for pretraining.

University of Groningen PhD thesis template

code for parallel TOF and NONTOF projections

GPU-based Monte Carlo simulation package for PET

Unifying Python/C++/CUDA memory: Python buffered array ↔️ `std::vector` ↔️ CUDA managed memory

Software for Tomographic Image Reconstruction

Very fast greedy diffeomorphic registration code

Development repository for the Triton language and compiler

Open-source multi-dimensional tomographic reconstruction software (OMEGA)

AMIDE: a Medical Imaging Data Examiner

[MICCAI 2024] Region Attention Transformer for Medical Image Restoration.

A machine learning compiler for GPUs, CPUs, and ML accelerators

syntax assistant for (medical) search engines

ImageMagick is a free, open-source software suite for creating, editing, converting, and displaying images. It supports 200+ formats and offers powerful command-line tools and APIs for automation, …

Active learning for systematic reviews

Tool for robust segmentation of >100 important anatomical structures in CT and MR images

3D Slicer extension for segment registration (aka fusion, contour propagation)

Example files on how to run STIR on GATE data

Wavelet Aided Parametric Imaging (WAPI) for Positron Emission Tomography (PET)

GPU/TPU accelerated nonlinear least-squares curve fitting using JAX