OpenCode client. Streaming chat, inline diffs, terminal UI. BYO server.

single-cell Contrastive INtegration

X-CRISP: Domain-Adaptable and Interpretable CRISPR Repair Outcome Prediction by Seale C and Gonçalves JP (Bioinformatics Advances 2025)

KErnel OPerationS, on CPUs and GPUs, with autodiff and without memory overflows

You like pytorch? You like micrograd? You love tinygrad! ❤️

Differentiable SDE solvers with GPU support and efficient sensitivity analysis.

A plugin for customizing the navigation structure of your MkDocs site.

High-definition modeling of chromatin + transcriptomics data

PyTorch Extension Library of Optimized Scatter Operations

Instruct-tune LLaMA on consumer hardware

GPT4All: Run Local LLMs on Any Device. Open-source and available for commercial use.

LLM inference in C/C++

cython + htslib == fast VCF and BCF processing

Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF

A latent text-to-image diffusion model

iqplot: Bokeh plots with one quantitative variable

Live-seq

An open access book on scientific visualization using python and matplotlib

Bitmap & tilemap generation from a single example with the help of ideas from quantum mechanics

A commenting system powered by GitHub Discussions. 💬 💎

A small library for automatical adjustment of text position in matplotlib plots to minimize overlaps.

THIS REPO IS NOT MAINTAINED ANYMORE. Please see https://codeberg.org/tenacityteam/tenacity for Tenacity, which is maintained.

Render collapsible JupyterLab errors with copy-paste functionality

Awesome resources on normalizing flows.

Boost LaTeX typesetting efficiency with preview, compile, autocomplete, colorize, and more.

A game theoretic approach to explain the output of any machine learning model.

Functional tensors for probabilistic programming

Statistical Rethinking (2nd ed.) with NumPyro

Bayesian Regression Models in Pyro