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1. nnUNet nnUNet Public

   Python 8.7k 2.4k

2. batchgenerators batchgenerators Public

   A framework for data augmentation for 2D and 3D image classification and segmentation

   Jupyter Notebook 1.2k 229

3. trixi trixi Public

   Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

   Python 228 21

4. TractSeg TractSeg Public

   Automatic White Matter Bundle Segmentation

   Python 264 80

5. basic_unet_example basic_unet_example Public

   An example project of how to use a U-Net for segmentation on medical images with PyTorch.

   Python 153 42

6. nnDetection nnDetection Public

   nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

   Python 651 122