Adaption of the original PennCNV algorithm for whole-genome sequencing data

Docker local slurm cluster

A tool to extract LOH blocks from VCF, BAM and FASTA data

Implementation of the hello-world pipeline from https://training.nextflow.io/hello_nextflow/02_hello_world

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

This repo contains a workflow that takes sequencing output from an Illumina sequencer, uses bcl2fastq to demultiplex reads and convert them to FASTQ format, and runs basic quality control.

Combination of correlated p-values

Config files used to define parameters specific to compute environments at different Institutions

Benchmark of array-based CNV calling tools

SEGCOND - A computational framework to propose genomic regions participating in the formation of transcriptional condensates.

Code used for the main analyses of the manuscript Jurgens et al. (2022). Nat Genet.

a web application for renting cars

Interactive Tutorials with R Markdown

R package and data for NPA models

An R script which takes genetic variants and designs probes for massively parallel reporter assays.

Statistical Rethinking course winter 2022

Change R Package Name