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@MannLabs

Mann Labs

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  1. alphadia alphadia Public

    modular & open DIA search

    Jupyter Notebook 96 9

  2. alphapeptdeep alphapeptdeep Public

    Deep learning framework for proteomics

    Jupyter Notebook 140 23

  3. CKG CKG Public

    Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

    Jupyter Notebook 570 120

  4. alphapept alphapept Public

    A modular, python-based framework for mass spectrometry. Powered by nbdev.

    HTML 183 34

  5. alphatims alphatims Public

    An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

    Python 92 30

  6. alphamap alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    Jupyter Notebook 90 21

Repositories

Showing 10 of 54 repositories
  • .github Public
    MannLabs/.github’s past year of commit activity
    0 1 0 1 Updated Dec 18, 2025
  • alphabase Public

    Infrastructure of AlphaX ecosystem

    MannLabs/alphabase’s past year of commit activity
    Python 51 Apache-2.0 13 7 12 Updated Dec 17, 2025
  • alphapeptdeep Public

    Deep learning framework for proteomics

    MannLabs/alphapeptdeep’s past year of commit activity
    Jupyter Notebook 140 Apache-2.0 23 22 3 Updated Dec 17, 2025
  • alpharaw Public

    An open-source Python package to unify raw MS data accession and storage.

    MannLabs/alpharaw’s past year of commit activity
    Python 29 Apache-2.0 11 9 0 Updated Dec 17, 2025
  • alphadia Public

    modular & open DIA search

    MannLabs/alphadia’s past year of commit activity
    Jupyter Notebook 96 Apache-2.0 9 14 12 Updated Dec 17, 2025
  • alphadia-search-rs Public
    MannLabs/alphadia-search-rs’s past year of commit activity
    Rust 0 Apache-2.0 0 0 3 Updated Dec 17, 2025
  • scPortrait Public

    scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

    MannLabs/scPortrait’s past year of commit activity
    Python 104 Apache-2.0 6 25 4 Updated Dec 15, 2025
  • alphakraken Public

    A fully automated data processing and analysis system for mass spectrometry experiments.

    MannLabs/alphakraken’s past year of commit activity
    Python 5 Apache-2.0 0 0 3 Updated Dec 15, 2025
  • dvp-io Public

    Read/write functions to and from spatialdata for Deep Visual Proteomics

    MannLabs/dvp-io’s past year of commit activity
    Python 13 Apache-2.0 3 1 1 Updated Dec 15, 2025
  • alphapepttools Public

    Search- and quantification-engine agnostic biological interpretation of proteomics data

    MannLabs/alphapepttools’s past year of commit activity
    Python 9 Apache-2.0 0 2 5 Updated Dec 13, 2025
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