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This repo aims to help Logseq users to sync their data with Git and GitHub.
Growing collection of scripts to summarize the scientific literature using large-language models like ChatGPT.
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
A privacy-first, open-source platform for knowledge management and collaboration. Download link: http://github.com/logseq/logseq/releases. roadmap: https://logseq.io/p/NX4mc_ggEV
Software for performing UDiTaS sequencing analysis.
warm-up for joining FirstLight Bio to implement genome editing NGS pipelines such as GUIDE-seq
Official repo for the #tidytuesday project
Generate the UMI count matrix from CEL-Seq2 sequencing data
tsailabSJ / guideseq
Forked from aryeelab/guideseqAnalysis pipeline for the GUIDE-seq assay.
NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline.
🍺🔬 Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
Quick mining and visualization of NGS data by integrating genomic databases
Tools for handling Unique Molecular Identifiers in NGS data sets
Official code repository for GATK versions 4 and up
A package for quantifying transposable elements at a locus level for RNAseq datasets.
R's data.table package extends data.frame:
🙃 A delightful community-driven (with 2,500+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python…
Software for Quantifying Interspersed Repeat Expression
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…
Mostly useful scripts and files for processing MiSeq amplicon data