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@NBISweden

NBIS - National Bioinformatics Infrastructure Sweden

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.
README.md

About

A distributed national bioinformatics infrastructure supporting life sciences in Sweden

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  1. MrBayes MrBayes Public

    MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

    C 280 87

  2. EMBLmyGFF3 EMBLmyGFF3 Public

    An efficient way to convert gff3 annotation files into EMBL format ready to submit.

    Python 67 15

  3. development-guidelines development-guidelines Public

    Development guidlines for software within NBIS.

    18 9

  4. excelerate-scRNAseq excelerate-scRNAseq Public

    Single RNA-seq data analysis with R (Finland, May, 2019)

    HTML 233 107

  5. GAAS GAAS Public

    Genome Assembly and Annotation Service code

    Perl 218 48

  6. IgDiscover-legacy IgDiscover-legacy Public archive

    Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

    Python 16 10

Repositories

Showing 10 of 379 repositories
  • bird-ringing Public

    A web-based interface and database for managing bird-ringing data on behalf of the Bird Ringing Centre at the Swedish Museum of Natural History, implemented together with NBIS (National Bioinformatics Infrastructure Sweden)

    NBISweden/bird-ringing's past year of commit activity
    Python 2 MIT 0 49 2 Updated Nov 12, 2026
  • claude-skills Public

    Claude Code skills from NBIS: /nbis:deeper and /nbis:verify

    NBISweden/claude-skills's past year of commit activity
    Shell 0 MIT 0 1 3 Updated Nov 12, 2026
  • sda-download-ui Public

    Repository containing the UI implementation of the sda-download service

    NBISweden/sda-download-ui's past year of commit activity
    TypeScript 0 AGPL-3.0 0 9 0 Updated Nov 12, 2026
  • workshop-r Public

    Workshop • R Programming Foundations for Data Analysis • 5 days

    NBISweden/workshop-r's past year of commit activity
    CSS 10 GPL-3.0 10 0 0 Updated Nov 12, 2026
  • workshop-dataviz Public

    Materials for NBIS workshop on advanced data visualization

    NBISweden/workshop-dataviz's past year of commit activity
    Lua 3 3 2 0 Updated Nov 12, 2026
  • biovat Public

    BioVAT (BIOdiversity Variant Analysis Toolkit), a modular Nextflow pipeline for population genomics analysis of non-model organisms

    NBISweden/biovat's past year of commit activity
    Nextflow 0 MIT 0 48 (1 issue needs help) 25 Updated Nov 12, 2026
  • sdafs Public

    FUSE file system driver for the sensitive data archive with a CSI driver for use in Kubernetes

    NBISweden/sdafs's past year of commit activity
    Go 0 MIT 0 0 0 Updated Nov 12, 2026
  • SCoRe_user_doc Public

    SCoRe user documentation

    NBISweden/SCoRe_user_doc's past year of commit activity
    Shell 0 GPL-3.0 0 4 0 Updated Nov 12, 2026
  • urdr Public

    Timelogging system of NBIS

    NBISweden/urdr's past year of commit activity
    TypeScript 0 AGPL-3.0 1 54 (1 issue needs help) 6 Updated Nov 11, 2026
  • redmine_utils Public

    Various script used to manage Redmine.

    NBISweden/redmine_utils's past year of commit activity
    Python 0 0 0 0 Updated Nov 11, 2026
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