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gemmar Public
R package for processing of GWAS inputs and outputs
R Apache License 2.0 UpdatedDec 10, 2025 -
fastq2highQualVCF Public
Scripts to process reads from FASTQ to VCF including filters
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seq-format-conversion Public
Forked from gatk-workflows/seq-format-conversionWorkflows for converting between sequence data formats
WDL BSD 3-Clause "New" or "Revised" License UpdatedJul 28, 2025 -
mllR Public
R package to wrap many common population genetics analyses into pipelines, beginning from raw VCF file
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countToFPKM Public
Forked from AAlhendi1707/countToFPKMConvert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
R GNU General Public License v3.0 UpdatedJul 18, 2024 -
gatk Public
Forked from broadinstitute/gatkOfficial code repository for GATK versions 4 and up
Java Other UpdatedApr 24, 2024 -
osu-salaries Public
Forked from daliposc/osu-salariesparse salary .pdf into pandas df to analyze salary by department type
HTML UpdatedFeb 4, 2024 -
RagTag Public
Forked from malonge/RagTagTools for fast and flexible genome assembly scaffolding and improvement
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Conference_Posters Public
Digital resources for posters presented at conferences
2 UpdatedAug 4, 2023 -
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pico_galaxy Public
Forked from peterjc/pico_galaxyGalaxy tools and wrappers for sequence analysis
Python UpdatedJun 17, 2021 -
fasta2nuccomp Public
Forked from knausb/nuccompSummarize the contents of FASTA files.
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alan Public
Forked from mpdunne/alanAlignment viewer for linux terminal
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effectR Public
Forked from grunwaldlab/effectRAn R package to call oomycete effectors
R UpdatedApr 17, 2020 -
OrthoFinder Public
Forked from davidemms/OrthoFinderPhylogenetic orthology inference for comparative genomics
Python GNU General Public License v3.0 UpdatedFeb 21, 2020 -
ggtree Public
Forked from YuLab-SMU/ggtree🎄Visualization and annotation of phylogenetic trees
R UpdatedMay 16, 2019 -
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vcfR Public
Forked from knausb/vcfRTools to work with variant call format files
R UpdatedDec 13, 2018 -
Elections_2018 Public
Some analysis of the 2018 elections. Focus is on Oregon.
R UpdatedNov 8, 2018 -
glossary Public
Forked from zachary-foster/glossaryAn R packge to add and link to a glossary in Rmarkdown-based websites
R UpdatedJul 11, 2018 -
vcfR_documentation Public
Forked from knausb/vcfR_documentationDocumentation for vcfR
HTML UpdatedJun 19, 2018 -
Using_R_With_Databases Public
Forked from Cascadia-R/Using_R_With_DatabasesStandardized Environment for R-studio Server.
UpdatedJun 2, 2018 -
poppr Public
Forked from grunwaldlab/poppr🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
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fastq-processing Public
Scripts that are useful in either a de novo or reference-based variant calling workflow
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RNASeq_Pipelines Public
Forked from RareSeas/RNASeq_PipelinesScripts for RNAseq analysis using SGE clusters, bash and R.
HTML UpdatedMar 3, 2016 -
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