Finding Recurrent Substitutions in Multiple Sequence Alignments

Callable Loci... and more

A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It u…

Bloatware Removal Utility, for automating removal of pre-installed, factory bloatware from devices running Windows 7-11 and newer. Silently removes items selected if possible. Preselects common blo…

An R package to visualize chromosome scale repeat patterns and predict centromere locations.

Integrative Composable Visualization Framework for ggplot2

Extensive de-novo TE Annotator

Timewarrior - Commandline Time Tracking and Reporting

An Association Test for Aggregated Sets of SNP-Level Summary Statistics

A tool to extract LOH blocks from VCF, BAM and FASTA data

Python API for comprehensive GWAS analysis using GEMMA

Statistical GENetics Input/Output Functions

{package} Make beautiful Raincloud plots in R!

An introduction to Oscar, Brown’s research computing cluster

A repository for a generative AI tool to assist in grant writing, particularly NIH style grants

Extract metadata from biosamples in NCBI

parse salary .pdf into pandas df to analyze salary by department type

Ascii game of Ants...

Tools for fast and flexible genome assembly scaffolding and improvement

Command line tool for converting CSV files into Markdown tables.

Code to reproduce analyses in Ma et al., 2020 ("Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae").

Text Only Genome Viewer!

Genome-wide Efficient Mixed Model Association

Enhancing {ggplot2} plots with statistical analysis 📊📣

genes and genomes at your fingertips

Digital resources for posters presented at conferences