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@AI-HHMI

AI@HHMI

Accelerating Innovation in Biology

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  1. miao miao Public

    PyTorch Interface for OME-NGFF Zarr Volumes

    Python 9 2

  2. tailcyclenet tailcyclenet Public

    A new pose estimation tool based on finetuning tracktail

    Python 6

  3. tracktail tracktail Public

    Python 3

  4. cloudglancer cloudglancer Public

    Simple interactive visualization tool for point clouds

    Python 2

  5. micro-agent micro-agent Public

    Code for agentic discovery & access of open-source microscopy data

    Python 2

  6. mia-evals mia-evals Public

    Scoring and leaderboards for volumetric instance and semantic segmentation.

    Python 2 1

Repositories

Showing 10 of 20 repositories
  • mia-agentic-search Public

    Agentic harvesting of open-source microscopy data

    AI-HHMI/mia-agentic-search's past year of commit activity
    Python 0 0 2 514 Updated Nov 12, 2026
  • lmd-catalog Public

    Yet another approach to dealing with miao configs and cluster data

    AI-HHMI/lmd-catalog's past year of commit activity
    Python 0 0 0 0 Updated Nov 11, 2026
  • mia-evals Public

    Scoring and leaderboards for volumetric instance and semantic segmentation.

    AI-HHMI/mia-evals's past year of commit activity
    Python 2 MIT 1 0 0 Updated Nov 11, 2026
  • tracktail Public
    AI-HHMI/tracktail's past year of commit activity
    Python 3 BSD-3-Clause 0 0 0 Updated Nov 11, 2026
  • mia-data-qc Public

    Automated QC checks over the LMD data/config folders, run as cron jobs, published as a static-HTML report site

    AI-HHMI/mia-data-qc's past year of commit activity
    HTML 0 0 1 0 Updated Nov 10, 2026
  • tailcyclenet Public

    A new pose estimation tool based on finetuning tracktail

    AI-HHMI/tailcyclenet's past year of commit activity
    Python 6 BSD-3-Clause 0 0 0 Updated Nov 9, 2026
  • mia-train Public

    PyTorch-native distributed training for volumetric microscopy

    AI-HHMI/mia-train's past year of commit activity
    Python 0 MIT 1 1 0 Updated Nov 8, 2026
  • tracktail-paper Public

    Repository for the Tracktail paper

    AI-HHMI/tracktail-paper's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Nov 5, 2026
  • tracktail-preprocessing Public

    Dataset converters for Tracktail (multi-view 3D point tracking)

    AI-HHMI/tracktail-preprocessing's past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Nov 5, 2026
  • miao Public

    PyTorch Interface for OME-NGFF Zarr Volumes

    AI-HHMI/miao's past year of commit activity
    Python 9 2 2 0 Updated Nov 3, 2026
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