Skip to content
View Adamtaranto's full-sized avatar
74 followers · 80 following

Achievements

Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx3Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@COMBINE-Canberra @bioconda

Block or report Adamtaranto

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
adamtaranto/README.md

Adam Taranto

I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.

👩‍💻 What I'm currently working on

🔭 Latest releases I've contributed to

  • tseemann/mlst (v2.25.0, 1 week ago) - 🆔 Scan contig files against PubMLST typing schemes
  • Adamtaranto/tSplit (v0.1.5, 2 weeks ago) - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
  • qjiangzhao/TEtrimmer (v1.6.2, 3 weeks ago) - TEtrimmer: a novel tool to automate manual curation of transposable elements
  • flexidot-bio/flexidot (v2.0.2, 1 month ago) - Highly customizable, ambiguity-aware dotplots for visual sequence analyses
  • Adamtaranto/deRIP2 (v0.4.1, 1 month ago) - Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.

GitHub Streak

GitHub Stats

Pinned Loading

  1. teloclip teloclip Public

    A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

    Python 50 4

  2. TIRmite TIRmite Public

    Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.

    Python 10 4

  3. deRIP2 deRIP2 Public

    Reconstruct ancestral state sequences of fungal repeat families by correcting for RIP-like mutations. Mask RIP or deamination events from alignments.

    Python

  4. TRF2GFF TRF2GFF Public

    Convert Tandem Repeat Finder dat file output into gff3 format

    Python 29 6