Repository containing code and intermediate data files for the "Gigabase-scale deletion scanning of the human genome" preprint

turns your codebase into an autoresearch loop — discovers what to measure, instruments the benchmark, then runs tree search with parallel subagents.

AlphaGenome PyTorch port

AI agents running research on single-GPU nanochat training automatically

Card-style Hugo theme designed for bloggers

Blog page for the Genomics x AI community

The official repository for the ARSENAL model

Research code accompanying AlphaGenome

Ongoing Project on Noise-Resistant DNNs for CRE Expression Prediction - Cold Spring Harbor Laboratory

Code to train and evaluate DREAM-RNN models on lentiMPRA data

The agent engineering platform.

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

PyTorch implementation of Basenji2.

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

The best ChatGPT that $100 can buy.

Linear Mode Connectivity in Multitask and Continual Learning: https://arxiv.org/abs/2010.04495

25e Programming Bootcamp Materials - Python, Bash, R, and Bioinformatics exercises

Compare neural networks by their feature similarity

Data-efficient Training of Machine Learning Models

xDecoder unlocks the potential of foundation models for few-shot personal gene expression prediction