BDM-Lab

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1. 3DMax 3DMax Public

   A maximum likelihood method for reconstructing 3D chromosome structure from chromosomal contact data

   Java 12 5

2. MOGEN MOGEN Public

   The software for modeling the 3D structure of a genome using Hi-C chromosome conformation capturing data

   Java 11 3

3. LorDG LorDG Public

   3D genome reconstruction with Lorentzian objective function

   Java 11 1

4. Hierarchical3DGenome Hierarchical3DGenome Public

   A hierarchical algorithm for building high-resolution 3D genome structures

   6 3

5. ClusterTAD ClusterTAD Public

   A clustering method for identifying topologically associated domains (TADs) from Hi-C data

   MATLAB 4 3

6. GSDB GSDB Public

   The scripts, web pages, and documents of the genome structure database (GSDB)

   JavaScript 3 4