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Supports SMILES import, also ships [extra-formats] - #1176

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BradyAJohnston wants to merge 3 commits into
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extra-formats
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BradyAJohnston wants to merge 3 commits into
mainfrom
extra-formats

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@BradyAJohnston

@BradyAJohnston BradyAJohnston commented Sep 2, 2026 •

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Fixes #1115 by adding import option and mn.Molecule.from_smiles().

To enable we have to ship rdkit, also now ship mdanalysis[extra-formats] so we can import other formats as well.

Bumps the .zip sizes by ~70-80MB which does push the linux version over 200 MB which is definitely not ideal.

Still unsure if I actually want to go ahead with this. The minimal thing to enable rdkit would be +~30MB.

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pr-1176 — 91070fde Deployed Sep 2, 2026 by github-actions[bot]
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Direct import SMILES

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