Name		Name	Last commit message	Last commit date
.github		.github
.test		.test
bin		bin
config		config
docker/carlisle_r		docker/carlisle_r
docs		docs
resources		resources
workflow		workflow
.editorconfig		.editorconfig
.gitattributes		.gitattributes
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
.prettierignore		.prettierignore
.prettierrc		.prettierrc
CHANGELOG.md		CHANGELOG.md
CITATION.cff		CITATION.cff
Dockerfile.go_enrichment		Dockerfile.go_enrichment
LICENSE		LICENSE
README.md		README.md
SECURITY.md		SECURITY.md
VERSION		VERSION
carlisle		carlisle
deploy_docs_to_ghpages.sh		deploy_docs_to_ghpages.sh
install.sh		install.sh
mkdocs.yml		mkdocs.yml

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CARLISLE

Cut And Run anaLysIS pipeLinE

This snakemake pipeline is built to run on Biowulf.

For comments/suggestions/advice please contact mailto:CCBR_Pipeliner@mail.nih.gov.

For detailed documentation on running the pipeline, please view the website: https://CCBR.github.io/CARLISLE/

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Cut And Run anaLysIS pipeLinE calls peaks using MACS2, SEACR and GoPeaks on spike-in normalized input fastqs.

ccbr.github.io/CARLISLE/

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