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Focusing
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Focusing
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Achievement: YOLOAchievement: Pull Sharkx2Achievement: Quickdraw

Achievements

Achievement: YOLOAchievement: Pull Sharkx2Achievement: Quickdraw

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@macrobomaster

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FarukEfe/README.md

Hi, I'm Efe 👋

CS co-op student at McMaster. Focus on ML and CompBio.

farukefe.github.io · LinkedIn · Email

  • 🧬 VP at McMaster SynBio, currently working on structural bioinformatics, and general project management.
  • 💼 AI Engineer Intern @ HAVELSAN: deep learning for trajectory prediction of ships and aircraft
  • 💼 Cyberserucity Intern @ Stealth Startup: pentesting tooling + B2B software for supply-chain.
  • 💼 Software Engineer Intern @ ROKETSAN: avionics software unit
  • 🌱 Interested in software safety and verification, computational biology, and AI

Competitions

  • IDEC 2026 (Cambridge, UK): leading McMaster SynBio's entry as VP
  • iGEM 2025 (Paris, France): metabolic modelling and the team wiki for our project Sterosaurus
  • iGEM 2021 (Remote): my first synbio competition, back in high school with team:Saint-Joseph. team wiki

SynBio work
iGEM 2025 team wiki Our Sterosaurus wiki, permanently archived by iGEM
IDEC 2026 team wiki In progress for Cambridge
mcmastersynbio.ca The team website. I built it and keep it running
RNA Thermosensor Designer Designs temperature-sensing RNA switches. Has an ML activity predictor to go with it
Ergosterol Overproduction GSM Genome-scale metabolic model of C. reinhardtii, from our iGEM 2025 project
LIMS Inventory system for the team's lab

Other builds
Epigenetic Markers of Memory Loss ML on DNA methylation data, from a bio hackathon
Shunting-Yard Math Compiler A math expression compiler written in C
Terminal Portfolio My portfolio is a terminal. Try the projects command

Full list on the portfolio.

Pinned Loading

  1. Yongsoo-Cho/LIMS-Demo Yongsoo-Cho/LIMS-Demo Public

    A customizable lab management system for iGEM teams built with Next.js and Supabase.

    TypeScript 1

  2. cre-ergosterol-gsm cre-ergosterol-gsm Public

    iGEM 2025. McMasterU. Gap-filling the genome-scale-metabolic-model iCre1355 with ergosterol pathway, and computationally testing strategies for its overproduction.

    Jupyter Notebook

  3. alexnet-nixos alexnet-nixos Public

    Python

  4. shunting-yard-math-compiler-c shunting-yard-math-compiler-c Public

    Algorithm for evaluating string mathematical expressions, and few Calculus operations in C.

    C

  5. hackbio-ca/epigenetic-memory-loss-methylation hackbio-ca/epigenetic-memory-loss-methylation Public

    Epigenetic Markers of Memory Loss: Using DNA Methylation Profiles to Predict Cognitive Impairment and Dementia

    Jupyter Notebook 1 2

  6. McMasterSynBio/rnat-activity-ml McMasterSynBio/rnat-activity-ml Public

    An extension to the design tool aimed to predict activity of rnat using a transformer-based architecture.

    Python