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onminiasm_CUDA

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Commits on Jul 21, 2017

• script to eval overlap sensitivity

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• optionally attach read names for mhap2paf

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Commits on Jul 18, 2017

• check SEQ and QUAL length for unmapped

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Commits on Jul 12, 2017

• sam2paf optionally converts primary only

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Commits on Jul 2, 2017

• work with SAM generated by blasr

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Commits on Jul 1, 2017

• also test reference length

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• test invalid cigars and too many cigars

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Commits on Jan 18, 2016

• added minimap evaluation

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Commits on Jan 17, 2016

• bug in paftop

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• merge & select the best mapping

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Commits on Dec 12, 2015

• convert smartdenovo to paf

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Commits on Nov 28, 2015

• updated the example

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Commits on Nov 26, 2015

• one direction edge only

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Commits on Nov 25, 2015

• import edges from one direction by default

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Commits on Nov 15, 2015

• convert PAF to MHAP

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• replaced js with perl

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Commits on Nov 14, 2015

• fix when identity is fraction not percentage

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• better usage

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• convert dazzler LAdump to PAF

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Commits on Nov 12, 2015

• convert mhap output to PAF

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Commits on Nov 9, 2015

• clarify that N50 is shorter without -I6G

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• increase index batch size

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• c.elegans example

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• renaming demo.sh

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Commits on Nov 8, 2015

• demo script

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Commits on Nov 6, 2015

• move more info from paftools

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